GTOOL

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Program for converting genetic data between different file formats and for creating subsets of a given dataset.

Our new algorithms use a new data format that allows genotypes to be stored with uncertainty.

This is the only program that can convert data from and into this new format.

GTOOL is a program for transforming sets of genotype data for use with the programs SNPTEST 2 and IMPUTE 4.

GTOOL can be used to:

  • generate subsets of genotype data

  • convert genotype data between the PED file format and the file format used by SNPTEST 2 and IMPUTE 4

  • merge genotype datasets together

  • orient genotype data according to a strand file

The software is part of the Oxford genome-wide analysis software suite (OGWASS). Commercial licence is available as whole or part of OGWASS.

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